PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G229000.1
Common NameB456_007G229000, LOC105804092
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 329aa    MW: 36997.8 Da    PI: 6.0562
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G229000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13152198455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Gorai.007G229000.1 152 DHVIAERKRREKLSQRFISLSALIPGL-----KKNDKASVLGDAIKYLKQLQ 198
                         6999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-15152209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-16153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-11153201No hitNo description
SMARTSM003532.1E-13154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEIASAKWLS ELEMEDPTLF PQYPTMNPID FSFDDFNFES FSPESYTSYT NIDHSHGLHI  60
EASHNVGDDD FRRPMKQLKT SSSNWKSSCI TDNIPPKAAS SSSSHIISFD NSNSSPPDIS  120
QHYCGLDRDL KRKNEVSKRV GSSTRAPLYA QDHVIAERKR REKLSQRFIS LSALIPGLKK  180
NDKASVLGDA IKYLKQLQER VGTLENQVAT KTMESVIIVR KTQIYSDDET SSCGENFESQ  240
SNNPFPEIEA RVSEKDVLIR IHCEKNKGCI PNIINEVEKL HLCVLNTNVL PFGQATLDIT  300
IVAQMEADFS MTVKDLVKSL RLALLNFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERKRRE
2157162RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492041.10.0PREDICTED: transcription factor bHLH19-like isoform X2
TrEMBLA0A0D2SIJ10.0A0A0D2SIJ1_G
STRINGVIT_07s0205g00190.t012e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-67bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]